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Great work!
Any plans to include the demuxing of stereoscopic .mkv files?

Didn't have any plans because I never heard of such a thing. Probably its usage is very small. Am I wrong?

Is there any point to loading such a file into DGIndexNV? Just to get demuxing?

It would actually be demuxing and possibly involve decoding i.e. outputting the left and right eye streams. Or perhaps just the independent AVC stream of the stereoscopic mkv.
Now I can't load such a mkv file in DGIndexNV e.g. for quick analysis or inspection. I can't however tell whether this would be of some general interest or rather not.